Code:
emerge --pretend jdepend | less
Turned up:
These are the packages that I would merge, in order:
Calculating dependencies ...done!
[ebuild N ] dev-java/java-config-1.2.10
[ebuild N ] dev-java/blackdown-jdk-1.4.1
[ebuild N ] dev-java/ant-core-1.6.2
[ebuild N ] app-arch/unzip-5.50-r2
[ebuild N ] dev-java/jdepend-2.6-r1
Presumably for some reason its trying to emerge jdepend before the others. Try emerging jdepend itself, or the above packages manually if that fails.