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Old 02-03-2010, 06:27 PM   #1
nbn792
Member
 
Registered: Dec 2003
Distribution: Debian
Posts: 109

Rep: Reputation: 15
Question python library linking problem


Hi. I am running lenny amd64. I have installed boost1.42, python2.5, numpy, nvidia cuda2.3, and pycuda. Trying to run the pycuda/test/test_driver gives:


Code:
garrett@dellhead:~/Desktop/pythonFiles/pycuda-0.93$ python test/test_driver.py
Traceback (most recent call last):
  File "test/test_driver.py", line 3, in <module>
    import pycuda.autoinit
  File "/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/autoinit.py", line 1, in <module>
    import pycuda.driver as cuda
  File "/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/driver.py", line 1, in <module>
    from _driver import *
ImportError: /usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so: undefined symbol: _ZTIN5boost6python15instance_holderE
garrett@dellhead:~/Desktop/pythonFiles/pycuda-0.93$
ldd results are:

Code:
garrett@dellhead:~/Desktop/pythonFiles/pycuda-0.93$ ldd -r /usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so
undefined symbol: _ZTIN5boost6python15instance_holderE  (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
        linux-vdso.so.1 =>  (0x00007fffa8bfe000)
        libcuda.so.1 => /usr/lib/libcuda.so.1 (0x00007f59a0257000)
        libstdc++.so.6 => /usr/lib/libstdc++.so.6 (0x00007f599ff4b000)
        libm.so.6 => /lib/libm.so.6 (0x00007f599fcc7000)
        libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x00007f599fab0000)
        libpthread.so.0 => /lib/libpthread.so.0 (0x00007f599f894000)
        libc.so.6 => /lib/libc.so.6 (0x00007f599f540000)
        libz.so.1 => /usr/lib/libz.so.1 (0x00007f599f329000)
        libdl.so.2 => /lib/libdl.so.2 (0x00007f599f125000)
        /lib64/ld-linux-x86-64.so.2 (0x00007f59a09fd000)
undefined symbol: _ZNK5boost6python7objects21py_function_impl_base9max_arityEv (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZTIN5boost6python7objects21py_function_impl_baseE    (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: PyExc_ImportError     (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: PyBool_Type   (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZTIN5boost6python17error_already_setE        (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python17error_already_setD1Ev       (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZTVN5boost6python17error_already_setE        (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: PyInt_Type    (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: PyFloat_Type  (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: PyExc_IndexError      (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: PyExc_MemoryError     (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: PyExc_DeprecationWarning      (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: PyTuple_Type  (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python6detail13current_scopeE       (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: PyExc_RuntimeError    (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _Py_NoneStruct        (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: PyString_Type (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: PyCObject_Type        (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python7objects9enum_baseC2EPKcPFP7_objectPKvEPFPvS6_EPFvS6_PNS0_9converter30rvalue_from_python_stage1_dataEENS0_9type_infoES4_     (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python9converter8registry6lookupENS0_9type_infoE   (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python7objects16add_to_namespaceERKNS0_3api6objectEPKcS5_S7_        (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python9converter25rvalue_from_python_stage1EP7_objectRKNS1_12registrationE  (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python9converter18shared_ptr_deleterC1ENS0_6handleI7_objectEE       (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python9converter19do_return_to_pythonEPKc   (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python9converter8registry6insertEPFPvP7_objectEPFvS5_PNS1_30rvalue_from_python_stage1_dataEENS0_9type_infoEPFPK11_typeobjectvE     (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python7objects23register_dynamic_id_auxENS0_9type_infoEPFSt4pairIPvS2_ES4_E (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python7objects10class_base12add_propertyEPKcRKNS0_3api6objectES4_   (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: PyLong_FromUnsignedLong       (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python7objects15function_objectERKNS1_11py_functionE(/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python7objects21py_function_impl_baseD2Ev   (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: PyBool_FromLong       (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: PyObject_AsWriteBuffer        (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python15instance_holder7installEP7_object   (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python7objects10class_base17set_instance_sizeEm    (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: PyObject_IsTrue       (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost11this_thread6get_idEv       (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python9converter8registry17lookup_shared_ptrENS0_9type_infoE        (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python6detail9list_baseC2Ev (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python3api7getitemERKNS1_6objectES4_        (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python7objects17copy_class_objectERKNS0_9type_infoES4_      (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python6detail11init_moduleEPKcPFvvE (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python6detail17scope_setattr_docEPKcRKNS0_3api6objectES3_   (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: PyString_FromStringAndSize    (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6detail12set_tss_dataEPKvNS_10shared_ptrINS0_20tss_cleanup_functionEEEPvb    (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python9converter18shared_ptr_deleterclEPKv  (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: PyErr_Format  (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: PyFloat_FromDouble    (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python6detail26register_exception_handlerERKNS_9function2IbRKNS1_17exception_handlerERKNS_9function0IvEEEE  (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python7objects9enum_base9to_pythonEP11_typeobjectl (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python3api6objectC1ERKNS0_6handleI7_objectEE       (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python7objects22make_nurse_and_patientEP7_objectS3_(/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python15instance_holder8allocateEP7_objectmm       (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python9converter6detail18arg_to_python_baseC2EPVKvRKNS1_12registrationE     (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python9converter18shared_ptr_deleterD1Ev    (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python7objects10class_baseC2EPKcmPKNS0_9type_infoES4_       (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: PyObject_AsReadBuffer (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
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undefined symbol: _ZN5boost6python7objects23stl_input_iterator_impl9incrementEv(/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python15instance_holderC2Ev (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: PyEval_RestoreThread  (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
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undefined symbol: _ZNK5boost6python9converter12registration21to_python_target_typeEv    (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python9converter8registry6insertEPFP7_objectPKvENS0_9type_infoEPFPK11_typeobjectvE  (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZNK5boost6python9converter12registration25expected_from_python_typeEv        (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: PyInt_FromLong        (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
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undefined symbol: _ZN5boost6python7objects10class_base11def_no_initEv   (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
undefined symbol: _ZN5boost6python15instance_holder10deallocateEP7_objectPv    (/usr/lib/python2.5/site-packages/pycuda-0.93-py2.5-linux-x86_64.egg/pycuda/_driver.so)
What can I do? I have googled around and it seems to be a linking problem. Everything claimed to build and install correctly. Everything seems to be working except pycuda. Is there something I can export to fix?

Thanks
 
Old 02-07-2010, 07:41 AM   #2
andmalc
LQ Newbie
 
Registered: Nov 2003
Distribution: Debian
Posts: 19

Rep: Reputation: 0
Can't help you but you'll probably get an answer by asking this on the Debian-Python list:

http://groups.google.ca/group/linux....n/topics?hl=en
 
  


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