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Yea really it's a matter of preference and what you plan on doing with freeBSD that decides what ports you should install, since you are talking about security you could always install things such as Tripwire which is a file system integrity tool, Or Installing and configuring iptables isnt a bad idea although I think ipfw comes ready to go if you feel like making rules for that. There is always snort if you plan on using an IDS. Other then that I cant think of anything generic that would suit someones needs. Everything is really specific to what you plan on doing with your instalation.
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