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As far as I know, the command 'fsck' is the way to check and repair fixable file system problems. There are a number of file system specific commands that do the checking and repairing. example : 'e2fsck' for a ext2 file system.
I suspect you are looking for a commercial product. I don't have experience with any specific product. So all I can suggest is a Google search. I did turn up some products that say they do the job. Here is one sample.
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