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How could it possibly run now?
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I don't know. Does it? If you ran 'make install' to install the compiled software, the executable files may be located at a different location than the sources that you downloaded. If 'make uninstall' didn't work, you need to look at the makefile (maybe you need to download again, as you probably deleted the file) and look for the install location. Then you'll need to delete everything by hand.
One alternative method to avoid these troubles is the use of checkinstall. This command may be run instead of 'make install' and produces an rpm file, which can be installed and uninstalled with YaST.