2 ways that I do it
Create a users and a password and move those files to that dummy user, su user to get them back - probably wont work for you though
Use GnuPG - man GnuPG then man gpg. I can't remember how exactly it is done but it is something like so...
Code:
gpg --gen-key #answer a bunch of questions
gpg -r (uid-from prev command) -e (file-to-encrypt)
gpg -r (uid) -d (encrypted-file-name.gpg) > encrypted-file-name
Make sure to test this out before you try on an actual file.