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Kinda hard to guess...
There are a few truly unique tools in Mepis that may help with this. If you boot up a live cd, you can login as root (horrors!) and launch any of the Mepis tools from the System>Mepis Settings group. The system assistant allows you to repair the partition (among other things). I have found that this will correct many issues.
Post back with more info if this doesn't work...
OTOH, Mepis installs so fast, maybe you should just reinstall....
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