Remember that apache is reasonably secure, and you can expose it to the internet, but samba cannot really be secured because it is using Microsoft's horribly bastardized version (NetBUI) of IBM's old NetBIOS protocol.
Firewall the samba stuff carefully, and it'll serve you well for transport between OSes. Leave your samba ports accessible from the Internet and you'll be 0wned; talking to the Internet is what web servers like Apache are for.
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