Scripting error - export command

Myiagros · 04-06-2010, 10:35 AM

Hmm... I've run all of my Grid submissions up to this point using bash. I may have to specify bash with my qsub command. I'll give it a try once I find the option for that.

catkin · 04-06-2010, 10:36 AM

Quote:

Originally Posted by Myiagros

... the script runs flawlessly without using Grid.

On that basis this is a Grid/qsub issue of which I know nothing. In case there are any Grid/qsub-sperts on LQ it might be worth starting a new thread with a Grid/qsub title.

Assuming simple scripts do work under Grid/qsub, you could try progressively simplifying one of your composite scripts toward a known-OK simple script until you find a change that no longer breaks (or progressively complexifying a known-OK simple script toward one of your composite scripts until it breaks ... ?

Myiagros · 04-06-2010, 10:53 AM

It appears to be working somewhat correctly now, besides a few typos on my part. Forcing "-S /bin/bash" on the qsub command seems to have worked. You've been helpful though, thanks!

catkin · 04-06-2010, 11:01 AM

Quote:

Originally Posted by Myiagros

It appears to be working somewhat correctly now, besides a few typos on my part. Forcing "-S /bin/bash" on the qsub command seems to have worked. You've been helpful though, thanks!

Glad you solved it -- and you are very courteous to write "You've been helpful though, thanks!", I don't think I helped much at all! Would be nice if qsub looked at the script and worked out which interpreter to use from the #! line.

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