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What if you set font size to 12? Do you see the change? Most likely you will not appreciate slight size differences on the screen, due to the resolution of the Matlab graphic. On the contrary if you print the image you will see such a difference.
In the attachment below you can see the printed x labels having size 3 (on the left) and 5 (on the right side) respectively. The image is magnified at 400% (hardly I can see the difference at the original size of the image).
A quick and ugly fix that worked for me was to install all the xorg-x11-font*. Don't know which one actually was needed, maybe someone with more knowledge could figure that out..
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