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Old 04-05-2013, 10:30 AM   #1
star130
LQ Newbie
 
Registered: Mar 2013
Posts: 2

Rep: Reputation: Disabled
Material Studio fail running in parallel


hi all ...
i have trouble running software Material Studio 6.1 (CASTEP) in parallel and it keep failed when i try to run the job... some file was generated after the job failure.. I thing it is related to intel mpi but i truly no idea about this problem. hope someone there familiar with this sofware... here i paste the error that was generated ...

[wafi@cluster 2tio]$ cat std.err
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image PC Routine Line Source
libibverbs.so.1 0000003169809530 Unknown Unknown Unknown
libmpi.so.4 00002B6A0CE8911D Unknown Unknown Unknown
libmpi.so.4 00002B6A0CE882B2 Unknown Unknown Unknown
libmpi.so.4 00002B6A0CE70B1D Unknown Unknown Unknown
libmpi.so.4 00002B6A0CE6F078 Unknown Unknown Unknown
libmpi.so.4 00002B6A0CE70747 Unknown Unknown Unknown
libmpi.so.4 00002B6A0CD48C43 Unknown Unknown Unknown
libmpi.so.4 00002B6A0CE62468 Unknown Unknown Unknown
libmpi.so.4 00002B6A0CE4343F Unknown Unknown Unknown
libmpi.so.4 00002B6A0CE38A0D Unknown Unknown Unknown
libmpigf.so.4 00002B6A0D18E2BF Unknown Unknown Unknown
castepexe.exe 00000000004EBF67 Unknown Unknown Unknown
castepexe.exe 000000000041178F Unknown Unknown Unknown
castepexe.exe 00000000004116BC Unknown Unknown Unknown
libc.so.6 000000316881ECDD Unknown Unknown Unknown
castepexe.exe 00000000004115C9 Unknown Unknown Unknown
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image PC Routine Line Source
libibverbs.so.1 0000003169809530 Unknown Unknown Unknown
libmpi.so.4 00002B9E6AD3411D Unknown Unknown Unknown
libmpi.so.4 00002B9E6AD332B2 Unknown Unknown Unknown
libmpi.so.4 00002B9E6AD1BB1D Unknown Unknown Unknown
libmpi.so.4 00002B9E6AD1A078 Unknown Unknown Unknown
libmpi.so.4 00002B9E6AD1B747 Unknown Unknown Unknown
libmpi.so.4 00002B9E6ABF3C43 Unknown Unknown Unknown
libmpi.so.4 00002B9E6AD0D468 Unknown Unknown Unknown
libmpi.so.4 00002B9E6ACEE43F Unknown Unknown Unknown
libmpi.so.4 00002B9E6ACE3A0D Unknown Unknown Unknown
libmpigf.so.4 00002B9E6B0392BF Unknown Unknown Unknown
castepexe.exe 00000000004EBF67 Unknown Unknown Unknown
castepexe.exe 000000000041178F Unknown Unknown Unknown
castepexe.exe 00000000004116BC Unknown Unknown Unknown
libc.so.6 000000316881ECDD Unknown Unknown Unknown
castepexe.exe 00000000004115C9 Unknown Unknown Unknown


and one more error..

[wafi@cluster 2tio]$ cat std_out.txt
cluster.hpc.org:432b:6b519900: 333 us(333 us): open_hca: device mlx4_0 not found
cluster.hpc.org:432c:d66e900: 336 us(336 us): open_hca: device mlx4_0 not found
cluster.hpc.org:432b:6b519900: 403 us(70 us): open_hca: device mlx4_0 not found
CMA: no RDMA devices found
CMA: no RDMA devices found
cluster.hpc.org:432b:6b519900: 770 us(367 us): open_hca: device mthca0 not found
compute-0-1.local:10a1:1d7db720: 359 us(359 us): compute-0-1.local:10a4:f143d720: 364 us(364 us): open_hca: device mlx4_0 not found
compute-0-1.local:10a3:cd936720: 366 us(366 us): open_hca: device mlx4_0 not found
compute-0-1.local:10a3:cd936720: 428 us(62 us): open_hca: device mlx4_0 not found
compute-0-1.local:10a4:f143d720: 427 us(63 us): open_hca: device mlx4_0 not found
open_hca: device mlx4_0 not found
cluster.hpc.org:432b:6b519900: 823 us(53 us): open_hca: device mthca0 not found
cluster.hpc.org:432b:6b519900: 871 us(48 us): open_hca: device ipath0 not found
cluster.hpc.org:432b:6b519900: 921 us(50 us): open_hca: device ipath0 not found
cluster.hpc.org:432b:6b519900: 970 us(49 us): open_hca: device ehca0 not found
CMA: no RDMA devices found
compute-0-1.local:10a1:1d7db720: 563 us(204 us): open_hca: device mlx4_0 not found
CMA: no RDMA devices found
CMA: no RDMA devices found
CMA: no RDMA devices found
CMA: no RDMA devices found
cluster.hpc.org:432c:d66e900: 405 us(69 us): open_hca: device mlx4_0 not found
CMA: no RDMA devices found
CMA: no RDMA devices found
cluster.hpc.org:432c:d66e900: 805 us(400 us): open_hca: device mthca0 not found
cluster.hpc.org:432c:d66e900: 857 us(52 us): open_hca: device mthca0 not found
cluster.hpc.org:432c:d66e900: 904 us(47 us): open_hca: device ipath0 not found
cluster.hpc.org:432c:d66e900: 985 us(81 us): open_hca: device ipath0 not found
compute-0-1.local:10a4:f143d720: 823 us(396 us): open_hca: device mthca0 not found
compute-0-1.local:10a3:cd936720: 838 us(410 us): open_hca: device mthca0 not found
compute-0-1.local:10a3:cd936720: 885 us(47 us): cluster.hpc.org:432c:d66e900: 1061 us(76 us): open_hca: device ehca0 not found
CMA: no RDMA devices found
cluster.hpc.org:432b:6b519900: 19 us(19 us): open_hca: device mlx4_0 not found
cluster.hpc.org:432b:6b519900: 41 us(22 us): open_hca: device mlx4_0 not found
cluster.hpc.org:432b:6b519900: 53 us(12 us): open_hca: device mthca0 not found
cluster.hpc.org:432b:6b519900: 66 us(13 us): open_hca: device mthca0 not found
CMA: no RDMA devices found
CMA: no RDMA devices found
cluster.hpc.org:432b:6b519900: 1291 us(321 us): open_hca: device mlx4_0 not found
compute-0-0.local:13e1:c0d34720: 348 us(348 us): open_hca: device mlx4_0 not found
compute-0-0.local:13e1:c0d34720: 519 us(171 us): compute-0-0.local:13e2:df835720: 279 us(279 us): open_hca: device mlx4_0 not found
open_hca: device mlx4_0 not found
compute-0-1.local:10a4:f143d720: 895 us(72 us): open_hca: device mthca0 not found
open_hca: device mthca0 not found
compute-0-1.local:10a4:f143d720: 938 us(43 us): open_hca: device ipath0 not found
compute-0-1.local:10a3:cd936720: 955 us(70 us): open_hca: device ipath0 not found
compute-0-1.local:10a3:cd936720: 998 us(43 us): compute-0-1.local:10a4:f143d720: 1008 us(70 us): open_hca: device ipath0 not found
open_hca: device ipath0 not found
compute-0-1.local:10a4:f143d720: 1053 us(45 us): open_hca: device ehca0 not found
compute-0-1.local:10a3:cd936720: 1067 us(69 us): open_hca: device ehca0 not found
CMA: no RDMA devices found
compute-0-0.local:13e0:eaa59720: 349 us(349 us): compute-0-0.local:13e5:991da720: 290 us(290 us): open_hca: device mlx4_0 not found
compute-0-0.local:13e5:991da720: 350 us(60 us): open_hca: device mlx4_0 not found
cluster.hpc.org:432b:6b519900: 1341 us(50 us): open_hca: device mlx4_0 not found
compute-0-0.local:13e2:df835720: 339 us(60 us): open_hca: device mlx4_0 not found
CMA: no RDMA devices found
CMA: no RDMA devices found
CMA: no RDMA devices found
compute-0-1.local:10a1:1d7db720: 1238 us(675 us): open_hca: device mthca0 not found
compute-0-1.local:10a4:f143d720: 18 us(18 us): compute-0-1.local:10a3:cd936720: 17 us(17 us): open_hca: device mlx4_0 not found
open_hca: device mlx4_0 not found
cluster.hpc.org:432c:d66e900: 18 us(18 us): open_hca: device mlx4_0 not found
cluster.hpc.org:432c:d66e900: 79 us(61 us): open_hca: device mlx4_0 not found
cluster.hpc.org:432c:d66e900: 92 us(13 us): open_hca: device mthca0 not found
cluster.hpc.org:432c:d66e900: 106 us(14 us): open_hca: device mthca0 not found
CMA: no RDMA devices found
CMA: no RDMA devices found
compute-0-1.local:10a3:cd936720: 37 us(20 us): compute-0-1.local:10a1:1d7db720: 1304 us(66 us): open_hca: device mthca0 not found
open_hca: device mlx4_0 not found
compute-0-1.local:10a4:f143d720: 61 us(43 us): open_hca: device mlx4_0 not found
compute-0-1.local:10a4:f143d720: 73 us(12 us): compute-0-1.local:10a3:cd936720: 74 us(37 us): open_hca: device mthca0 not found
open_hca: device mthca0 not found
compute-0-1.local:10a4:f143d720: 98 us(25 us): open_hca: device mthca0 not found
compute-0-1.local:10a1:1d7db720: 1347 us(43 us): open_hca: device ipath0 not found
compute-0-1.local:10a3:cd936720: 112 us(38 us): CMA: no RDMA devices found
open_hca: device mthca0 not found
CMA: no RDMA devices found
compute-0-1.local:10a1:1d7db720: 1388 us(41 us): open_hca: device ipath0 not found
CMA: no RDMA devices found
CMA: no RDMA devices found
compute-0-1.local:10a1:1d7db720: 1437 us(49 us): CMA: no RDMA devices found
compute-0-1.local:10a4:f143d720: 1447 us(394 us): open_hca: device mlx4_0 not found
cluster.hpc.org:432c:d66e900: 1597 us(536 us): open_hca: device mlx4_0 not found
cluster.hpc.org:432c:d66e900: 1650 us(53 us): open_hca: device mlx4_0 not found
compute-0-0.local:13e0:eaa59720: 535 us(186 us): open_hca: device mlx4_0 not found
CMA: no RDMA devices found
CMA: no RDMA devices found
CMA: no RDMA devices found
compute-0-0.local:13e1:c0d34720: 998 us(479 us): open_hca: device mthca0 not found
compute-0-0.local:13e1:c0d34720: 1047 us(49 us): open_hca: device mthca0 not found
CMA: no RDMA devices found
compute-0-0.local:13e1:c0d34720: 1091 us(44 us): open_hca: device ipath0 not found
compute-0-0.local:13e1:c0d34720: 1134 us(43 us): open_hca: device ipath0 not found
CMA: no RDMA devices found
compute-0-0.local:13e0:eaa59720: 1052 us(517 us): open_hca: device mthca0 not found
open_hca: device ehca0 not found
CMA: no RDMA devices found
compute-0-1.local:10a3:cd936720: 1489 us(422 us): open_hca: device mlx4_0 not found
compute-0-1.local:10a4:f143d720: 1492 us(45 us): open_hca: device mlx4_0 not found
compute-0-1.local:10a3:cd936720: 1534 us(45 us): open_hca: device mlx4_0 not found
compute-0-1.local:10a1:1d7db720: 18 us(18 us): open_hca: device mlx4_0 not found
compute-0-1.local:10a1:1d7db720: 40 us(22 us): open_hca: device mlx4_0 not found
compute-0-1.local:10a2:9e4fe720: 690 us(690 us): open_hca: device mlx4_0 not found
compute-0-0.local:13e0:eaa59720: 1174 us(122 us): open_hca: device mthca0 not found
compute-0-0.local:13e0:eaa59720: 1278 us(104 us): open_hca: device ipath0 not found
compute-0-0.local:13e0:eaa59720: 1383 us(105 us): compute-0-0.local:13e1:c0d34720: 1180 us(46 us): open_hca: device ehca0 not found
CMA: no RDMA devices found
compute-0-0.local:13e2:df835720: 1009 us(670 us): open_hca: device mthca0 not found
compute-0-0.local:13e2:df835720: 1118 us(109 us): compute-0-0.local:13e1:c0d34720: 19 us(19 us): open_hca: device mlx4_0 not found
open_hca: device mthca0 not found
compute-0-1.local:10a1:1d7db720: 51 us(11 us): open_hca: device mthca0 not found
compute-0-1.local:10a1:1d7db720: 63 us(12 us): open_hca: device mthca0 not found
CMA: no RDMA devices found
CMA: no RDMA devices found
compute-0-1.local:10a2:9e4fe720: 766 us(76 us): open_hca: device mlx4_0 not found
compute-0-1.local:10a1:1d7db720: 1791 us(354 us): open_hca: device mlx4_0 not found
compute-0-1.local:10a1:1d7db720: 1837 us(46 us): open_hca: device mlx4_0 not found
compute-0-0.local:13e1:c0d34720: 41 us(22 us): open_hca: device mlx4_0 not found
compute-0-0.local:13e3:bb186720: 328 us(328 us): compute-0-0.local:13e1:c0d34720: 72 us(31 us): open_hca: device mthca0 not found
open_hca: device mlx4_0 not found
compute-0-0.local:13e1:c0d34720: 105 us(33 us): open_hca: device mthca0 not found
CMA: no RDMA devices found
compute-0-0.local:13e3:bb186720: 413 us(85 us): CMA: no RDMA devices found
open_hca: device mlx4_0 not found
compute-0-0.local:13e1:c0d34720: 1582 us(402 us): open_hca: device mlx4_0 not found
compute-0-0.local:13e2:df835720: 1388 us(270 us): open_hca: device ipath0 not found
compute-0-0.local:13e0:eaa59720: 1486 us(103 us): open_hca: device ehca0 not found
CMA: no RDMA devices found
CMA: no RDMA devices found
CMA: no RDMA devices found
compute-0-1.local:10a2:9e4fe720: 1153 us(387 us): open_hca: device mthca0 not found
compute-0-0.local:13e0:eaa59720: 16 us(16 us): open_hca: device mlx4_0 not found
compute-0-0.local:13e1:c0d34720: 1649 us(67 us): open_hca: device mlx4_0 not found
open_hca: device ipath0 not found
compute-0-0.local:13e2:df835720: 1520 us(132 us): open_hca: device ipath0 not found
compute-0-1.local:10a2:9e4fe720: 1200 us(47 us): open_hca: device mthca0 not found
compute-0-1.local:10a2:9e4fe720: 1244 us(44 us): open_hca: device ipath0 not found
compute-0-1.local:10a2:9e4fe720: 1301 us(57 us): open_hca: device ipath0 not found
compute-0-0.local:13e2:df835720: 1628 us(108 us): CMA: no RDMA devices found
open_hca: device ehca0 not found
CMA: no RDMA devices found
CMA: no RDMA devices found
compute-0-0.local:13e3:bb186720: 911 us(498 us): open_hca: device mthca0 not found
compute-0-0.local:13e3:bb186720: 979 us(68 us): open_hca: device mthca0 not found
compute-0-0.local:13e0:eaa59720: 97 us(81 us): open_hca: device mlx4_0 not found
compute-0-0.local:13e0:eaa59720: 168 us(71 us): open_hca: device mthca0 not found
compute-0-0.local:13e0:eaa59720: 239 us(71 us): open_hca: device mthca0 not found
CMA: no RDMA devices found
CMA: no RDMA devices found
compute-0-1.local:10a2:9e4fe720: 1352 us(51 us): open_hca: device ehca0 not found
CMA: no RDMA devices found
compute-0-1.local:10a2:9e4fe720: 16 us(16 us): open_hca: device mlx4_0 not found
compute-0-1.local:10a2:9e4fe720: 44 us(28 us): open_hca: device mlx4_0 not found
compute-0-1.local:10a2:9e4fe720: 57 us(13 us): open_hca: device mthca0 not found
compute-0-1.local:10a2:9e4fe720: 70 us(13 us): open_hca: device mthca0 not found
CMA: no RDMA devices found
CMA: no RDMA devices found
compute-0-0.local:13e0:eaa59720: 2194 us(708 us): open_hca: device mlx4_0 not found
compute-0-0.local:13e3:bb186720: 1042 us(63 us): open_hca: device ipath0 not found
compute-0-0.local:13e3:bb186720: 1127 us(85 us): open_hca: device ipath0 not found
compute-0-1.local:10a2:9e4fe720: 1707 us(355 us): open_hca: device mlx4_0 not found
compute-0-1.local:10a2:9e4fe720: 1755 us(48 us): open_hca: device mlx4_0 not found
compute-0-0.local:13e0:eaa59720: 2300 us(106 us): open_hca: device mlx4_0 not found
open_hca: device mlx4_0 not found
compute-0-0.local:13e3:bb186720: 1207 us(80 us): open_hca: device ehca0 not found
compute-0-0.local:13e2:df835720: 51 us(51 us): open_hca: device mlx4_0 not found
CMA: no RDMA devices found
compute-0-0.local:13e2:df835720: 93 us(42 us): open_hca: device mlx4_0 not found
compute-0-0.local:13e2:df835720: 167 us(74 us): open_hca: device mthca0 not found
compute-0-0.local:13e2:df835720: 239 us(72 us): compute-0-0.local:13e3:bb186720: 16 us(16 us): open_hca: device mthca0 not found
open_hca: device mlx4_0 not found
compute-0-0.local:13e3:bb186720: 74 us(58 us): open_hca: device mlx4_0 not found
CMA: no RDMA devices found
CMA: no RDMA devices found
compute-0-0.local:13e5:991da720: 2757 us(2407 us): open_hca: device mthca0 not found
compute-0-0.local:13e5:991da720: 2863 us(106 us): open_hca: device mthca0 not found
compute-0-0.local:13e3:bb186720: 123 us(49 us): open_hca: device mthca0 not found
compute-0-0.local:13e3:bb186720: 156 us(33 us): open_hca: device mthca0 not found
CMA: no RDMA devices found
CMA: no RDMA devices found
CMA: no RDMA devices found
CMA: no RDMA devices found
compute-0-0.local:13e2:df835720: 2606 us(978 us): open_hca: device mlx4_0 not found
compute-0-0.local:13e3:bb186720: 1748 us(541 us): open_hca: device mlx4_0 not found
compute-0-0.local:13e3:bb186720: 1824 us(76 us): open_hca: device mlx4_0 not found
compute-0-0.local:13e5:991da720: 2964 us(101 us): open_hca: device ipath0 not found
compute-0-0.local:13e5:991da720: 3010 us(46 us): open_hca: device ipath0 not found
compute-0-0.local:13e2:df835720: 2727 us(121 us): open_hca: device mlx4_0 not found
compute-0-0.local:13e4:5605c720: 271 us(271 us): open_hca: device mlx4_0 not found
compute-0-0.local:13e4:5605c720: 329 us(58 us): open_hca: device mlx4_0 not found
compute-0-0.local:13e5:991da720: 3064 us(54 us): open_hca: device ehca0 not found
CMA: no RDMA devices found
compute-0-0.local:13e5:991da720: 16 us(16 us): open_hca: device mlx4_0 not found
compute-0-0.local:13e5:991da720: 36 us(20 us): open_hca: device mlx4_0 not found
CMA: no RDMA devices found
CMA: no RDMA devices found
compute-0-0.local:13e4:5605c720: 663 us(334 us): open_hca: device mthca0 not found
compute-0-0.local:13e4:5605c720: 726 us(63 us): open_hca: device mthca0 not found
compute-0-0.local:13e4:5605c720: 770 us(44 us): open_hca: device ipath0 not found
compute-0-0.local:13e4:5605c720: 815 us(45 us): open_hca: device ipath0 not found
compute-0-0.local:13e4:5605c720: 859 us(44 us): open_hca: device ehca0 not found
compute-0-0.local:13e5:991da720: 48 us(12 us): open_hca: device mthca0 not found
compute-0-0.local:13e5:991da720: 61 us(13 us): open_hca: device mthca0 not found
CMA: no RDMA devices found
CMA: no RDMA devices found
compute-0-0.local:13e5:991da720: 3391 us(327 us): open_hca: device mlx4_0 not found
compute-0-0.local:13e5:991da720: 3437 us(46 us): open_hca: device mlx4_0 not found
CMA: no RDMA devices found
compute-0-0.local:13e4:5605c720: 16 us(16 us): open_hca: device mlx4_0 not found
compute-0-0.local:13e4:5605c720: 37 us(21 us): open_hca: device mlx4_0 not found
compute-0-0.local:13e4:5605c720: 49 us(12 us): open_hca: device mthca0 not found
compute-0-0.local:13e4:5605c720: 62 us(13 us): open_hca: device mthca0 not found
CMA: no RDMA devices found
CMA: no RDMA devices found
compute-0-0.local:13e4:5605c720: 1175 us(316 us): open_hca: device mlx4_0 not found
compute-0-0.local:13e4:5605c720: 1223 us(48 us): open_hca: device mlx4_0 not found
APPLICATION TERMINATED WITH THE EXIT STRING: Hangup (signal 1)


hope someone could help me with this problem...

regard
wafi
 
  


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