From what I understand...
You say that /var/named/chroot/etc/named.conf is a symlink to /etc/named.conf
It should be the other way around unless I am confused.
Here is what I have working on RHEL4 machine running BIND 9.2.4
Code:
# ls -l /etc/named.conf
lrwxrwxrwx 1 root root 32 Nov 28 22:33 /etc/named.conf -> /var/named/chroot/etc/named.conf
]# ls -l /var/named/chroot/etc/named.conf
-rw-r--r-- 1 root named 2415 Nov 5 09:15 /var/named/chroot/etc/named.conf
then again maybe I am misunderstanding.