root folder of what? root user, root file system, or apaches root directory?
When you create a site in apache it needs it own 'virtual' root. that is the primary directory of your site. It can be anyware as long as apache can read from it.
In your site configuration you need something like this to set up the sites root:
Code:
DocumentRoot /home/htdocs/yoursite/
<Directory />
Options FollowSymLinks
AllowOverride All
</Directory>
<Directory />
Options FollowSymLinks
AllowOverride All
</Directory>
<Directory /home/htdocs/yoursite/>
Options Indexes FollowSymLinks MultiViews
Options FollowSymLinks
AllowOverride All
Order allow,deny
allow from all
</Directory>
If you have stuff like this post the sites configuration. There has to be something wrong with it that i telling the server look in the wring place.
Dan