Configure is nothing more than a script made by some of the software developers to check that certain things exist on your system, and to further modify/configure your package to suite your needs.
The error you are getting is most likely caused by:
1. The developer did not create a configure script.
2. You are not in the correct directory where the configure script lives.
3. The configure script does not have execute bit set, at least not for that user.
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