Dear all

I am unable to install Lammps 7may11 on ubuntu 11.04. After spending a lot of time on it I conclude that I need a "LIONHEART". Is there any????

I think if you want help you're going to have to provide a better description of your problem.

Can you explain what 'Lammps 7may11' is? Posting a link to a relevant website might help. (Is it this http://lammps.sandia.gov/ ?)

I have no idea what a 'LIONHEART' is.

1 members found this post helpful.

Dear
Actually I am new on ubuntu, more accurately on Linux. I didn't found any easy way to install this specific version of lammps i.e. 7may11 on ubuntu 11.04. I found lot of methods but those methods are related to old versions of lammps on old versions of ubuntu. I have applied almost all but useless.
nowwwwwww?????

0 members found this post helpful.

Again, we don't know what you're talking about. "Lammps 7may11" means nothing, nor does lionheart. Was the link arizonagroovejet provided the link to your project?

And how about providing some actual DETAILS? Things like what error(s) you're seeing, when, and what you're doing to generate them. Just saying you have "applied almost all but useless", tells us nothing. And the "nowwwwwwww????" doesn't make people want to answer you quicker.....

First of all I try this:

niaz@shanisi:~$ cd /opt/lammps-7May11/src/
niaz@shanisi:/opt/lammps-7May11/src$ make linux
mkdir: cannot create directory `Obj_linux': Permission denied
make: *** [linux] Error 1

Thenn with sudo:

niaz@shanisi:/opt/lammps-7May11/src$ sudo make linux
[sudo] password for niaz:
make[1]: Entering directory `/opt/lammps-7May11/src/Obj_linux'
Makefile:104: angle_charmm.d: No such file or directory
Makefile:104: angle_class2.d: No such file or directory
Makefile:104: angle_cosine.d: No such file or directory
Makefile:104: angle_cosine_delta.d: No such file or directory
Makefile:104: angle_cosine_periodic.d: No such file or directory
Makefile:104: angle_cosine_squared.d: No such file or directory
Makefile:104: angle.d: No such file or directory
Makefile:104: angle_harmonic.d: No such file or directory
Makefile:104: angle_hybrid.d: No such file or directory
Makefile:104: angle_table.d: No such file or directory
Makefile:104: atom.d: No such file or directory
Makefile:104: atom_vec_angle.d: No such file or directory
Makefile:104: atom_vec_atomic.d: No such file or directory
Makefile:104: atom_vec_bond.d: No such file or directory
Makefile:104: atom_vec_charge.d: No such file or directory
Makefile:104: atom_vec.d: No such file or directory
Makefile:104: atom_vec_dipole.d: No such file or directory
Makefile:104: atom_vec_ellipsoid.d: No such file or directory
Makefile:104: atom_vec_full.d: No such file or directory
Makefile:104: atom_vec_hybrid.d: No such file or directory
Makefile:104: atom_vec_molecular.d: No such file or directory
Makefile:104: atom_vec_peri.d: No such file or directory
Makefile:104: atom_vec_sphere.d: No such file or directory
Makefile:104: bond_class2.d: No such file or directory
Makefile:104: bond.d: No such file or directory
Makefile:104: bond_fene.d: No such file or directory
Makefile:104: bond_fene_expand.d: No such file or directory
Makefile:104: bond_harmonic.d: No such file or directory
Makefile:104: bond_hybrid.d: No such file or directory
Makefile:104: bond_morse.d: No such file or directory
Makefile:104: bond_nonlinear.d: No such file or directory
Makefile:104: bond_quartic.d: No such file or directory
Makefile:104: bond_table.d: No such file or directory
Makefile:104: change_box.d: No such file or directory
Makefile:104: comm.d: No such file or directory
Makefile:104: compute_angle_local.d: No such file or directory
Makefile:104: compute_atom_molecule.d: No such file or directory
Makefile:104: compute_bond_local.d: No such file or directory
Makefile:104: compute_centro_atom.d: No such file or directory
Makefile:104: compute_cluster_atom.d: No such file or directory
Makefile:104: compute_cna_atom.d: No such file or directory
Makefile:104: compute_com.d: No such file or directory
Makefile:104: compute_com_molecule.d: No such file or directory
Makefile:104: compute_coord_atom.d: No such file or directory
Makefile:104: compute.d: No such file or directory
Makefile:104: compute_damage_atom.d: No such file or directory
Makefile:104: compute_dihedral_local.d: No such file or directory
Makefile:104: compute_displace_atom.d: No such file or directory
Makefile:104: compute_erotate_asphere.d: No such file or directory
Makefile:104: compute_erotate_sphere.d: No such file or directory
Makefile:104: compute_event_displace.d: No such file or directory
Makefile:104: compute_group_group.d: No such file or directory
Makefile:104: compute_gyration.d: No such file or directory
Makefile:104: compute_gyration_molecule.d: No such file or directory
Makefile:104: compute_heat_flux.d: No such file or directory
Makefile:104: compute_improper_local.d: No such file or directory
Makefile:104: compute_ke_atom.d: No such file or directory
Makefile:104: compute_ke.d: No such file or directory
Makefile:104: compute_msd.d: No such file or directory
Makefile:104: compute_msd_molecule.d: No such file or directory
Makefile:104: compute_pair.d: No such file or directory
Makefile:104: compute_pair_local.d: No such file or directory
Makefile:104: compute_pe_atom.d: No such file or directory
Makefile:104: compute_pe.d: No such file or directory
Makefile:104: compute_pressure.d: No such file or directory
Makefile:104: compute_property_atom.d: No such file or directory
Makefile:104: compute_property_local.d: No such file or directory
Makefile:104: compute_property_molecule.d: No such file or directory
Makefile:104: compute_rdf.d: No such file or directory
Makefile:104: compute_reduce.d: No such file or directory
Makefile:104: compute_reduce_region.d: No such file or directory
Makefile:104: compute_stress_atom.d: No such file or directory
Makefile:104: compute_temp_asphere.d: No such file or directory
Makefile:104: compute_temp_com.d: No such file or directory
Makefile:104: compute_temp.d: No such file or directory
Makefile:104: compute_temp_deform.d: No such file or directory
Makefile:104: compute_temp_partial.d: No such file or directory
Makefile:104: compute_temp_profile.d: No such file or directory
Makefile:104: compute_temp_ramp.d: No such file or directory
Makefile:104: compute_temp_region.d: No such file or directory
Makefile:104: compute_temp_sphere.d: No such file or directory
Makefile:104: compute_ti.d: No such file or directory
Makefile:104: create_atoms.d: No such file or directory
Makefile:104: create_box.d: No such file or directory
Makefile:104: delete_atoms.d: No such file or directory
Makefile:104: delete_bonds.d: No such file or directory
Makefile:104: dihedral_charmm.d: No such file or directory
Makefile:104: dihedral_class2.d: No such file or directory
Makefile:104: dihedral.d: No such file or directory
Makefile:104: dihedral_harmonic.d: No such file or directory
Makefile:104: dihedral_helix.d: No such file or directory
Makefile:104: dihedral_hybrid.d: No such file or directory
Makefile:104: dihedral_multi_harmonic.d: No such file or directory
Makefile:104: dihedral_opls.d: No such file or directory
Makefile:104: displace_atoms.d: No such file or directory
Makefile:104: displace_box.d: No such file or directory
Makefile:104: domain.d: No such file or directory
Makefile:104: dump_atom.d: No such file or directory
Makefile:104: dump_cfg.d: No such file or directory
Makefile:104: dump.d: No such file or directory
Makefile:104: dump_custom.d: No such file or directory
Makefile:104: dump_dcd.d: No such file or directory
Makefile:104: dump_local.d: No such file or directory
Makefile:104: dump_xtc.d: No such file or directory
Makefile:104: dump_xyz.d: No such file or directory
Makefile:104: error.d: No such file or directory
Makefile:104: ewald.d: No such file or directory
Makefile:104: fft3d.d: No such file or directory
Makefile:104: fft3d_wrap.d: No such file or directory
Makefile:104: finish.d: No such file or directory
Makefile:104: fix_adapt.d: No such file or directory
Makefile:104: fix_addforce.d: No such file or directory
Makefile:104: fix_ave_atom.d: No such file or directory
Makefile:104: fix_ave_correlate.d: No such file or directory
Makefile:104: fix_aveforce.d: No such file or directory
Makefile:104: fix_ave_histo.d: No such file or directory
Makefile:104: fix_ave_spatial.d: No such file or directory
Makefile:104: fix_ave_time.d: No such file or directory
Makefile:104: fix_bond_break.d: No such file or directory
Makefile:104: fix_bond_create.d: No such file or directory
Makefile:104: fix_bond_swap.d: No such file or directory
Makefile:104: fix_box_relax.d: No such file or directory
Makefile:104: fix.d: No such file or directory
Makefile:104: fix_deform.d: No such file or directory
Makefile:104: fix_deposit.d: No such file or directory
Makefile:104: fix_drag.d: No such file or directory
Makefile:104: fix_dt_reset.d: No such file or directory
Makefile:104: fix_efield.d: No such file or directory
Makefile:104: fix_enforce2d.d: No such file or directory
Makefile:104: fix_evaporate.d: No such file or directory
Makefile:104: fix_event.d: No such file or directory
Makefile:104: fix_event_prd.d: No such file or directory
Makefile:104: fix_event_tad.d: No such file or directory
Makefile:104: fix_external.d: No such file or directory
Makefile:104: fix_freeze.d: No such file or directory
Makefile:104: fix_gpu.d: No such file or directory
Makefile:104: fix_gravity.d: No such file or directory
Makefile:104: fix_heat.d: No such file or directory
Makefile:104: fix_indent.d: No such file or directory
Makefile:104: fix_langevin.d: No such file or directory
Makefile:104: fix_lineforce.d: No such file or directory
Makefile:104: fix_minimize.d: No such file or directory
Makefile:104: fix_momentum.d: No such file or directory
Makefile:104: fix_move.d: No such file or directory
Makefile:104: fix_msst.d: No such file or directory
Makefile:104: fix_neb.d: No such file or directory
Makefile:104: fix_nh_asphere.d: No such file or directory
Makefile:104: fix_nh.d: No such file or directory
Makefile:104: fix_nh_sphere.d: No such file or directory
Makefile:104: fix_nph_asphere.d: No such file or directory
Makefile:104: fix_nph.d: No such file or directory
Makefile:104: fix_nph_sphere.d: No such file or directory
Makefile:104: fix_npt_asphere.d: No such file or directory
Makefile:104: fix_npt.d: No such file or directory
Makefile:104: fix_npt_sphere.d: No such file or directory
Makefile:104: fix_nve_asphere.d: No such file or directory
Makefile:104: fix_nve.d: No such file or directory
Makefile:104: fix_nve_limit.d: No such file or directory
Makefile:104: fix_nve_noforce.d: No such file or directory
Makefile:104: fix_nve_sphere.d: No such file or directory
Makefile:104: fix_nvt_asphere.d: No such file or directory
Makefile:104: fix_nvt.d: No such file or directory
Makefile:104: fix_nvt_sllod.d: No such file or directory
Makefile:104: fix_nvt_sphere.d: No such file or directory
Makefile:104: fix_orient_fcc.d: No such file or directory
Makefile:104: fix_peri_neigh.d: No such file or directory
Makefile:104: fix_planeforce.d: No such file or directory
Makefile:104: fix_poems.d: No such file or directory
Makefile:104: fix_pour.d: No such file or directory
Makefile:104: fix_press_berendsen.d: No such file or directory
Makefile:104: fix_print.d: No such file or directory
Makefile:104: fix_qeq_comb.d: No such file or directory
Makefile:104: fix_read_restart.d: No such file or directory
Makefile:104: fix_reax_bonds.d: No such file or directory
Makefile:104: fix_recenter.d: No such file or directory
Makefile:104: fix_respa.d: No such file or directory
Makefile:104: fix_rigid.d: No such file or directory
Makefile:104: fix_rigid_nve.d: No such file or directory
Makefile:104: fix_rigid_nvt.d: No such file or directory
Makefile:104: fix_setforce.d: No such file or directory
Makefile:104: fix_shake.d: No such file or directory
Makefile:104: fix_shear_history.d: No such file or directory
Makefile:104: fix_spring.d: No such file or directory
Makefile:104: fix_spring_rg.d: No such file or directory
Makefile:104: fix_spring_self.d: No such file or directory
Makefile:104: fix_store_force.d: No such file or directory
Makefile:104: fix_store_state.d: No such file or directory
Makefile:104: fix_temp_berendsen.d: No such file or directory
Makefile:104: fix_temp_rescale.d: No such file or directory
Makefile:104: fix_thermal_conductivity.d: No such file or directory
Makefile:104: fix_tmd.d: No such file or directory
Makefile:104: fix_ttm.d: No such file or directory
Makefile:104: fix_viscosity.d: No such file or directory
Makefile:104: fix_viscous.d: No such file or directory
Makefile:104: fix_wall_colloid.d: No such file or directory
Makefile:104: fix_wall.d: No such file or directory
Makefile:104: fix_wall_gran.d: No such file or directory
Makefile:104: fix_wall_harmonic.d: No such file or directory
Makefile:104: fix_wall_lj126.d: No such file or directory
Makefile:104: fix_wall_lj93.d: No such file or directory
Makefile:104: fix_wall_reflect.d: No such file or directory
Makefile:104: fix_wall_region.d: No such file or directory
Makefile:104: force.d: No such file or directory
Makefile:104: group.d: No such file or directory
Makefile:104: improper_class2.d: No such file or directory
Makefile:104: improper.d: No such file or directory
Makefile:104: improper_cvff.d: No such file or directory
Makefile:104: improper_harmonic.d: No such file or directory
Makefile:104: improper_hybrid.d: No such file or directory
Makefile:104: improper_umbrella.d: No such file or directory
Makefile:104: input.d: No such file or directory
Makefile:104: integrate.d: No such file or directory
Makefile:104: irregular.d: No such file or directory
Makefile:104: kspace.d: No such file or directory
Makefile:104: lammps.d: No such file or directory
Makefile:104: lattice.d: No such file or directory
Makefile:104: library.d: No such file or directory
Makefile:104: main.d: No such file or directory
Makefile:104: math_extra.d: No such file or directory
Makefile:104: memory.d: No such file or directory
Makefile:104: min_cg.d: No such file or directory
Makefile:104: min.d: No such file or directory
Makefile:104: min_fire.d: No such file or directory
Makefile:104: min_hftn.d: No such file or directory
Makefile:104: minimize.d: No such file or directory
Makefile:104: min_linesearch.d: No such file or directory
Makefile:104: min_quickmin.d: No such file or directory
Makefile:104: min_sd.d: No such file or directory
Makefile:104: modify.d: No such file or directory
Makefile:104: neb.d: No such file or directory
Makefile:104: neigh_bond.d: No such file or directory
Makefile:104: neighbor.d: No such file or directory
Makefile:104: neigh_derive.d: No such file or directory
Makefile:104: neigh_full.d: No such file or directory
Makefile:104: neigh_gran.d: No such file or directory
Makefile:104: neigh_half_bin.d: No such file or directory
Makefile:104: neigh_half_multi.d: No such file or directory
Makefile:104: neigh_half_nsq.d: No such file or directory
Makefile:104: neigh_list.d: No such file or directory
Makefile:104: neigh_request.d: No such file or directory
Makefile:104: neigh_respa.d: No such file or directory
Makefile:104: neigh_stencil.d: No such file or directory
Makefile:104: output.d: No such file or directory
Makefile:104: pack.d: No such file or directory
Makefile:104: pair_airebo.d: No such file or directory
Makefile:104: pair_born_coul_long.d: No such file or directory
Makefile:104: pair_born.d: No such file or directory
Makefile:104: pair_buck_coul_cut.d: No such file or directory
Makefile:104: pair_buck_coul_long.d: No such file or directory
Makefile:104: pair_buck.d: No such file or directory
Makefile:104: pair_colloid.d: No such file or directory
Makefile:104: pair_comb.d: No such file or directory
Makefile:104: pair_coul_cut.d: No such file or directory
Makefile:104: pair_coul_debye.d: No such file or directory
Makefile:104: pair_coul_long.d: No such file or directory
Makefile:104: pair.d: No such file or directory
Makefile:104: pair_dipole_cut.d: No such file or directory
Makefile:104: pair_dpd.d: No such file or directory
Makefile:104: pair_dpd_tstat.d: No such file or directory
Makefile:104: pair_dsmc.d: No such file or directory
Makefile:104: pair_eam_alloy.d: No such file or directory
Makefile:104: pair_eam_alloy_opt.d: No such file or directory
Makefile:104: pair_eam.d: No such file or directory
Makefile:104: pair_eam_fs.d: No such file or directory
Makefile:104: pair_eam_fs_opt.d: No such file or directory
Makefile:104: pair_eam_opt.d: No such file or directory
Makefile:104: pair_eim.d: No such file or directory
Makefile:104: pair_gauss.d: No such file or directory
Makefile:104: pair_gayberne.d: No such file or directory
Makefile:104: pair_gayberne_gpu.d: No such file or directory
Makefile:104: pair_gran_hertz_history.d: No such file or directory
Makefile:104: pair_gran_hooke.d: No such file or directory
Makefile:104: pair_gran_hooke_history.d: No such file or directory
Makefile:104: pair_hbond_dreiding_lj.d: No such file or directory
Makefile:104: pair_hbond_dreiding_morse.d: No such file or directory
Makefile:104: pair_hybrid.d: No such file or directory
Makefile:104: pair_hybrid_overlay.d: No such file or directory
Makefile:104: pair_lj96_cut.d: No such file or directory
Makefile:104: pair_lj96_cut_gpu.d: No such file or directory
Makefile:104: pair_lj_charmm_coul_charmm.d: No such file or directory
Makefile:104: pair_lj_charmm_coul_charmm_implicit.d: No such file or directory
Makefile:104: pair_lj_charmm_coul_long.d: No such file or directory
Makefile:104: pair_lj_charmm_coul_long_gpu.d: No such file or directory
Makefile:104: pair_lj_charmm_coul_long_opt.d: No such file or directory
Makefile:104: pair_lj_class2_coul_cut.d: No such file or directory
Makefile:104: pair_lj_class2_coul_long.d: No such file or directory
Makefile:104: pair_lj_class2.d: No such file or directory
Makefile:104: pair_lj_cut_coul_cut.d: No such file or directory
Makefile:104: pair_lj_cut_coul_cut_gpu.d: No such file or directory
Makefile:104: pair_lj_cut_coul_debye.d: No such file or directory
Makefile:104: pair_lj_cut_coul_long.d: No such file or directory
Makefile:104: pair_lj_cut_coul_long_gpu.d: No such file or directory
Makefile:104: pair_lj_cut_coul_long_tip4p.d: No such file or directory
Makefile:104: pair_lj_cut.d: No such file or directory
Makefile:104: pair_lj_cut_gpu.d: No such file or directory
Makefile:104: pair_lj_cut_opt.d: No such file or directory
Makefile:104: pair_lj_expand.d: No such file or directory
Makefile:104: pair_lj_expand_gpu.d: No such file or directory
Makefile:104: pair_lj_gromacs_coul_gromacs.d: No such file or directory
Makefile:104: pair_lj_gromacs.d: No such file or directory
Makefile:104: pair_lj_smooth.d: No such file or directory
Makefile:104: pair_lubricate.d: No such file or directory
Makefile:104: pair_meam.d: No such file or directory
Makefile:104: pair_morse.d: No such file or directory
Makefile:104: pair_morse_gpu.d: No such file or directory
Makefile:104: pair_morse_opt.d: No such file or directory
Makefile:104: pair_peri_lps.d: No such file or directory
Makefile:104: pair_peri_pmb.d: No such file or directory
Makefile:104: pair_reax.d: No such file or directory
Makefile:104: pair_resquared.d: No such file or directory
Makefile:104: pair_soft.d: No such file or directory
Makefile:104: pair_sw.d: No such file or directory
Makefile:104: pair_table.d: No such file or directory
Makefile:104: pair_tersoff.d: No such file or directory
Makefile:104: pair_tersoff_zbl.d: No such file or directory
Makefile:104: pair_yukawa_colloid.d: No such file or directory
Makefile:104: pair_yukawa.d: No such file or directory
Makefile:104: pppm.d: No such file or directory
Makefile:104: pppm_gpu.d: No such file or directory
Makefile:104: pppm_gpu_double.d: No such file or directory
Makefile:104: pppm_gpu_single.d: No such file or directory
Makefile:104: pppm_tip4p.d: No such file or directory
Makefile:104: prd.d: No such file or directory
Makefile:104: random_mars.d: No such file or directory
Makefile:104: random_park.d: No such file or directory
Makefile:104: read_data.d: No such file or directory
Makefile:104: read_restart.d: No such file or directory
Makefile:104: region_block.d: No such file or directory
Makefile:104: region_cone.d: No such file or directory
Makefile:104: region.d: No such file or directory
Makefile:104: region_cylinder.d: No such file or directory
Makefile:104: region_intersect.d: No such file or directory
Makefile:104: region_plane.d: No such file or directory
Makefile:104: region_prism.d: No such file or directory
Makefile:104: region_sphere.d: No such file or directory
Makefile:104: region_union.d: No such file or directory
Makefile:104: remap.d: No such file or directory
Makefile:104: remap_wrap.d: No such file or directory
Makefile:104: replicate.d: No such file or directory
Makefile:104: respa.d: No such file or directory
Makefile:104: run.d: No such file or directory
Makefile:104: set.d: No such file or directory
Makefile:104: special.d: No such file or directory
Makefile:104: tad.d: No such file or directory
Makefile:104: temper.d: No such file or directory
Makefile:104: thermo.d: No such file or directory
Makefile:104: timer.d: No such file or directory
Makefile:104: universe.d: No such file or directory
Makefile:104: update.d: No such file or directory
Makefile:104: variable.d: No such file or directory
Makefile:104: velocity.d: No such file or directory
Makefile:104: verlet.d: No such file or directory
Makefile:104: write_restart.d: No such file or directory
Makefile:104: xdr_compat.d: No such file or directory
mpiicc -O -DLAMMPS_GZIP -I../../lib/reax -I../../lib/poems -I../../lib/meam -DMPICH_SKIP_MPICXX -I/usr/local/fft -DFFT_FFTW -M xdr_compat.cpp > xdr_compat.d
/bin/sh: mpiicc: not found
make[1]: *** [xdr_compat.d] Error 127
make[1]: Leaving directory `/opt/lammps-7May11/src/Obj_linux'
make: *** [linux] Error 2
niaz@shanisi:/opt/lammps-7May11/src$

0 members found this post helpful.

Usually source bundles have a file inside called README or INSTALL or something similar to that which contain instructions on how to compile and install the software. Did you look for such a file and if so are you following what it says?

You still haven't confirmed whether or not the software I linked to is what you're trying to install. Is it or isn't it? (And if it isn't, post a link to what you are trying to install.)


Please wrap commands and any output from them in CODE tags.

Great. Now if you answered any of the other questions we've asked you, perhaps we could help.

I am trying to install lammps which is a molecular dynamics package. According to their instructions, when I try to install it, it returns error that I have already sent. What else??

You are right that it's the same software for which you posted following link: http://lammps.sandia.gov/

Now that you've provided some clear answers and details, that gives folks more things to work with. And you've built it according to their instructions?? From their website here:
http://lammps.sandia.gov/doc/Section_start.html#2_2
Have you tried to run it as root, instead of using SUDO?

Now

With root and following commands:

1. make -f Makefile.list linux

root@shanisi:/opt/lammps-7May11/src# make -f Makefile.list linux
make[1]: Entering directory `/opt/lammps-7May11/src/Obj_linux'
Makefile:104: angle_charmm.d: No such file or directory
Makefile:104: angle_class2.d: No such file or directory
Makefile:104: angle_cosine.d: No such file or directory
Makefile:104: angle_cosine_delta.d: No such file or directory
Makefile:104: angle_cosine_periodic.d: No such file or directory
Makefile:104: angle_cosine_squared.d: No such file or directory
Makefile:104: angle.d: No such file or directory
Makefile:104: angle_harmonic.d: No such file or directory
Makefile:104: angle_hybrid.d: No such file or directory
Makefile:104: angle_table.d: No such file or directory
Makefile:104: atom.d: No such file or directory
Makefile:104: atom_vec_angle.d: No such file or directory
Makefile:104: atom_vec_atomic.d: No such file or directory
Makefile:104: atom_vec_bond.d: No such file or directory
Makefile:104: atom_vec_charge.d: No such file or directory
Makefile:104: atom_vec.d: No such file or directory
Makefile:104: atom_vec_dipole.d: No such file or directory
Makefile:104: atom_vec_ellipsoid.d: No such file or directory
Makefile:104: atom_vec_full.d: No such file or directory
Makefile:104: atom_vec_hybrid.d: No such file or directory
Makefile:104: atom_vec_molecular.d: No such file or directory
Makefile:104: atom_vec_peri.d: No such file or directory
Makefile:104: atom_vec_sphere.d: No such file or directory
Makefile:104: bond_class2.d: No such file or directory
Makefile:104: bond.d: No such file or directory
Makefile:104: bond_fene.d: No such file or directory
Makefile:104: bond_fene_expand.d: No such file or directory
Makefile:104: bond_harmonic.d: No such file or directory
Makefile:104: bond_hybrid.d: No such file or directory
Makefile:104: bond_morse.d: No such file or directory
Makefile:104: bond_nonlinear.d: No such file or directory
Makefile:104: bond_quartic.d: No such file or directory
Makefile:104: bond_table.d: No such file or directory
Makefile:104: change_box.d: No such file or directory
Makefile:104: comm.d: No such file or directory
Makefile:104: compute_angle_local.d: No such file or directory
Makefile:104: compute_atom_molecule.d: No such file or directory
Makefile:104: compute_bond_local.d: No such file or directory
Makefile:104: compute_centro_atom.d: No such file or directory
Makefile:104: compute_cluster_atom.d: No such file or directory
Makefile:104: compute_cna_atom.d: No such file or directory
Makefile:104: compute_com.d: No such file or directory
Makefile:104: compute_com_molecule.d: No such file or directory
Makefile:104: compute_coord_atom.d: No such file or directory
Makefile:104: compute.d: No such file or directory
Makefile:104: compute_damage_atom.d: No such file or directory
Makefile:104: compute_dihedral_local.d: No such file or directory
Makefile:104: compute_displace_atom.d: No such file or directory
Makefile:104: compute_erotate_asphere.d: No such file or directory
Makefile:104: compute_erotate_sphere.d: No such file or directory
Makefile:104: compute_event_displace.d: No such file or directory
Makefile:104: compute_group_group.d: No such file or directory
Makefile:104: compute_gyration.d: No such file or directory
Makefile:104: compute_gyration_molecule.d: No such file or directory
Makefile:104: compute_heat_flux.d: No such file or directory
Makefile:104: compute_improper_local.d: No such file or directory
Makefile:104: compute_ke_atom.d: No such file or directory
Makefile:104: compute_ke.d: No such file or directory
Makefile:104: compute_msd.d: No such file or directory
Makefile:104: compute_msd_molecule.d: No such file or directory
Makefile:104: compute_pair.d: No such file or directory
Makefile:104: compute_pair_local.d: No such file or directory
Makefile:104: compute_pe_atom.d: No such file or directory
Makefile:104: compute_pe.d: No such file or directory
Makefile:104: compute_pressure.d: No such file or directory
Makefile:104: compute_property_atom.d: No such file or directory
Makefile:104: compute_property_local.d: No such file or directory
Makefile:104: compute_property_molecule.d: No such file or directory
Makefile:104: compute_rdf.d: No such file or directory
Makefile:104: compute_reduce.d: No such file or directory
Makefile:104: compute_reduce_region.d: No such file or directory
Makefile:104: compute_stress_atom.d: No such file or directory
Makefile:104: compute_temp_asphere.d: No such file or directory
Makefile:104: compute_temp_com.d: No such file or directory
Makefile:104: compute_temp.d: No such file or directory
Makefile:104: compute_temp_deform.d: No such file or directory
Makefile:104: compute_temp_partial.d: No such file or directory
Makefile:104: compute_temp_profile.d: No such file or directory
Makefile:104: compute_temp_ramp.d: No such file or directory
Makefile:104: compute_temp_region.d: No such file or directory
Makefile:104: compute_temp_sphere.d: No such file or directory
Makefile:104: compute_ti.d: No such file or directory
Makefile:104: create_atoms.d: No such file or directory
Makefile:104: create_box.d: No such file or directory
Makefile:104: delete_atoms.d: No such file or directory
Makefile:104: delete_bonds.d: No such file or directory
Makefile:104: dihedral_charmm.d: No such file or directory
Makefile:104: dihedral_class2.d: No such file or directory
Makefile:104: dihedral.d: No such file or directory
Makefile:104: dihedral_harmonic.d: No such file or directory
Makefile:104: dihedral_helix.d: No such file or directory
Makefile:104: dihedral_hybrid.d: No such file or directory
Makefile:104: dihedral_multi_harmonic.d: No such file or directory
Makefile:104: dihedral_opls.d: No such file or directory
Makefile:104: displace_atoms.d: No such file or directory
Makefile:104: displace_box.d: No such file or directory
Makefile:104: domain.d: No such file or directory
Makefile:104: dump_atom.d: No such file or directory
Makefile:104: dump_cfg.d: No such file or directory
Makefile:104: dump.d: No such file or directory
Makefile:104: dump_custom.d: No such file or directory
Makefile:104: dump_dcd.d: No such file or directory
Makefile:104: dump_local.d: No such file or directory
Makefile:104: dump_xtc.d: No such file or directory
Makefile:104: dump_xyz.d: No such file or directory
Makefile:104: error.d: No such file or directory
Makefile:104: ewald.d: No such file or directory
Makefile:104: fft3d.d: No such file or directory
Makefile:104: fft3d_wrap.d: No such file or directory
Makefile:104: finish.d: No such file or directory
Makefile:104: fix_adapt.d: No such file or directory
Makefile:104: fix_addforce.d: No such file or directory
Makefile:104: fix_ave_atom.d: No such file or directory
Makefile:104: fix_ave_correlate.d: No such file or directory
Makefile:104: fix_aveforce.d: No such file or directory
Makefile:104: fix_ave_histo.d: No such file or directory
Makefile:104: fix_ave_spatial.d: No such file or directory
Makefile:104: fix_ave_time.d: No such file or directory
Makefile:104: fix_bond_break.d: No such file or directory
Makefile:104: fix_bond_create.d: No such file or directory
Makefile:104: fix_bond_swap.d: No such file or directory
Makefile:104: fix_box_relax.d: No such file or directory
Makefile:104: fix.d: No such file or directory
Makefile:104: fix_deform.d: No such file or directory
Makefile:104: fix_deposit.d: No such file or directory
Makefile:104: fix_drag.d: No such file or directory
Makefile:104: fix_dt_reset.d: No such file or directory
Makefile:104: fix_efield.d: No such file or directory
Makefile:104: fix_enforce2d.d: No such file or directory
Makefile:104: fix_evaporate.d: No such file or directory
Makefile:104: fix_event.d: No such file or directory
Makefile:104: fix_event_prd.d: No such file or directory
Makefile:104: fix_event_tad.d: No such file or directory
Makefile:104: fix_external.d: No such file or directory
Makefile:104: fix_freeze.d: No such file or directory
Makefile:104: fix_gpu.d: No such file or directory
Makefile:104: fix_gravity.d: No such file or directory
Makefile:104: fix_heat.d: No such file or directory
Makefile:104: fix_indent.d: No such file or directory
Makefile:104: fix_langevin.d: No such file or directory
Makefile:104: fix_lineforce.d: No such file or directory
Makefile:104: fix_minimize.d: No such file or directory
Makefile:104: fix_momentum.d: No such file or directory
Makefile:104: fix_move.d: No such file or directory
Makefile:104: fix_msst.d: No such file or directory
Makefile:104: fix_neb.d: No such file or directory
Makefile:104: fix_nh_asphere.d: No such file or directory
Makefile:104: fix_nh.d: No such file or directory
Makefile:104: fix_nh_sphere.d: No such file or directory
Makefile:104: fix_nph_asphere.d: No such file or directory
Makefile:104: fix_nph.d: No such file or directory
Makefile:104: fix_nph_sphere.d: No such file or directory
Makefile:104: fix_npt_asphere.d: No such file or directory
Makefile:104: fix_npt.d: No such file or directory
Makefile:104: fix_npt_sphere.d: No such file or directory
Makefile:104: fix_nve_asphere.d: No such file or directory
Makefile:104: fix_nve.d: No such file or directory
Makefile:104: fix_nve_limit.d: No such file or directory
Makefile:104: fix_nve_noforce.d: No such file or directory
Makefile:104: fix_nve_sphere.d: No such file or directory
Makefile:104: fix_nvt_asphere.d: No such file or directory
Makefile:104: fix_nvt.d: No such file or directory
Makefile:104: fix_nvt_sllod.d: No such file or directory
Makefile:104: fix_nvt_sphere.d: No such file or directory
Makefile:104: fix_orient_fcc.d: No such file or directory
Makefile:104: fix_peri_neigh.d: No such file or directory
Makefile:104: fix_planeforce.d: No such file or directory
Makefile:104: fix_poems.d: No such file or directory
Makefile:104: fix_pour.d: No such file or directory
Makefile:104: fix_press_berendsen.d: No such file or directory
Makefile:104: fix_print.d: No such file or directory
Makefile:104: fix_qeq_comb.d: No such file or directory
Makefile:104: fix_read_restart.d: No such file or directory
Makefile:104: fix_reax_bonds.d: No such file or directory
Makefile:104: fix_recenter.d: No such file or directory
Makefile:104: fix_respa.d: No such file or directory
Makefile:104: fix_rigid.d: No such file or directory
Makefile:104: fix_rigid_nve.d: No such file or directory
Makefile:104: fix_rigid_nvt.d: No such file or directory
Makefile:104: fix_setforce.d: No such file or directory
Makefile:104: fix_shake.d: No such file or directory
Makefile:104: fix_shear_history.d: No such file or directory
Makefile:104: fix_spring.d: No such file or directory
Makefile:104: fix_spring_rg.d: No such file or directory
Makefile:104: fix_spring_self.d: No such file or directory
Makefile:104: fix_store_force.d: No such file or directory
Makefile:104: fix_store_state.d: No such file or directory
Makefile:104: fix_temp_berendsen.d: No such file or directory
Makefile:104: fix_temp_rescale.d: No such file or directory
Makefile:104: fix_thermal_conductivity.d: No such file or directory
Makefile:104: fix_tmd.d: No such file or directory
Makefile:104: fix_ttm.d: No such file or directory
Makefile:104: fix_viscosity.d: No such file or directory
Makefile:104: fix_viscous.d: No such file or directory
Makefile:104: fix_wall_colloid.d: No such file or directory
Makefile:104: fix_wall.d: No such file or directory
Makefile:104: fix_wall_gran.d: No such file or directory
Makefile:104: fix_wall_harmonic.d: No such file or directory
Makefile:104: fix_wall_lj126.d: No such file or directory
Makefile:104: fix_wall_lj93.d: No such file or directory
Makefile:104: fix_wall_reflect.d: No such file or directory
Makefile:104: fix_wall_region.d: No such file or directory
Makefile:104: force.d: No such file or directory
Makefile:104: group.d: No such file or directory
Makefile:104: improper_class2.d: No such file or directory
Makefile:104: improper.d: No such file or directory
Makefile:104: improper_cvff.d: No such file or directory
Makefile:104: improper_harmonic.d: No such file or directory
Makefile:104: improper_hybrid.d: No such file or directory
Makefile:104: improper_umbrella.d: No such file or directory
Makefile:104: input.d: No such file or directory
Makefile:104: integrate.d: No such file or directory
Makefile:104: irregular.d: No such file or directory
Makefile:104: kspace.d: No such file or directory
Makefile:104: lammps.d: No such file or directory
Makefile:104: lattice.d: No such file or directory
Makefile:104: library.d: No such file or directory
Makefile:104: main.d: No such file or directory
Makefile:104: math_extra.d: No such file or directory
Makefile:104: memory.d: No such file or directory
Makefile:104: min_cg.d: No such file or directory
Makefile:104: min.d: No such file or directory
Makefile:104: min_fire.d: No such file or directory
Makefile:104: min_hftn.d: No such file or directory
Makefile:104: minimize.d: No such file or directory
Makefile:104: min_linesearch.d: No such file or directory
Makefile:104: min_quickmin.d: No such file or directory
Makefile:104: min_sd.d: No such file or directory
Makefile:104: modify.d: No such file or directory
Makefile:104: neb.d: No such file or directory
Makefile:104: neigh_bond.d: No such file or directory
Makefile:104: neighbor.d: No such file or directory
Makefile:104: neigh_derive.d: No such file or directory
Makefile:104: neigh_full.d: No such file or directory
Makefile:104: neigh_gran.d: No such file or directory
Makefile:104: neigh_half_bin.d: No such file or directory
Makefile:104: neigh_half_multi.d: No such file or directory
Makefile:104: neigh_half_nsq.d: No such file or directory
Makefile:104: neigh_list.d: No such file or directory
Makefile:104: neigh_request.d: No such file or directory
Makefile:104: neigh_respa.d: No such file or directory
Makefile:104: neigh_stencil.d: No such file or directory
Makefile:104: output.d: No such file or directory
Makefile:104: pack.d: No such file or directory
Makefile:104: pair_airebo.d: No such file or directory
Makefile:104: pair_born_coul_long.d: No such file or directory
Makefile:104: pair_born.d: No such file or directory
Makefile:104: pair_buck_coul_cut.d: No such file or directory
Makefile:104: pair_buck_coul_long.d: No such file or directory
Makefile:104: pair_buck.d: No such file or directory
Makefile:104: pair_colloid.d: No such file or directory
Makefile:104: pair_comb.d: No such file or directory
Makefile:104: pair_coul_cut.d: No such file or directory
Makefile:104: pair_coul_debye.d: No such file or directory
Makefile:104: pair_coul_long.d: No such file or directory
Makefile:104: pair.d: No such file or directory
Makefile:104: pair_dipole_cut.d: No such file or directory
Makefile:104: pair_dpd.d: No such file or directory
Makefile:104: pair_dpd_tstat.d: No such file or directory
Makefile:104: pair_dsmc.d: No such file or directory
Makefile:104: pair_eam_alloy.d: No such file or directory
Makefile:104: pair_eam_alloy_opt.d: No such file or directory
Makefile:104: pair_eam.d: No such file or directory
Makefile:104: pair_eam_fs.d: No such file or directory
Makefile:104: pair_eam_fs_opt.d: No such file or directory
Makefile:104: pair_eam_opt.d: No such file or directory
Makefile:104: pair_eim.d: No such file or directory
Makefile:104: pair_gauss.d: No such file or directory
Makefile:104: pair_gayberne.d: No such file or directory
Makefile:104: pair_gayberne_gpu.d: No such file or directory
Makefile:104: pair_gran_hertz_history.d: No such file or directory
Makefile:104: pair_gran_hooke.d: No such file or directory
Makefile:104: pair_gran_hooke_history.d: No such file or directory
Makefile:104: pair_hbond_dreiding_lj.d: No such file or directory
Makefile:104: pair_hbond_dreiding_morse.d: No such file or directory
Makefile:104: pair_hybrid.d: No such file or directory
Makefile:104: pair_hybrid_overlay.d: No such file or directory
Makefile:104: pair_lj96_cut.d: No such file or directory
Makefile:104: pair_lj96_cut_gpu.d: No such file or directory
Makefile:104: pair_lj_charmm_coul_charmm.d: No such file or directory
Makefile:104: pair_lj_charmm_coul_charmm_implicit.d: No such file or directory
Makefile:104: pair_lj_charmm_coul_long.d: No such file or directory
Makefile:104: pair_lj_charmm_coul_long_gpu.d: No such file or directory
Makefile:104: pair_lj_charmm_coul_long_opt.d: No such file or directory
Makefile:104: pair_lj_class2_coul_cut.d: No such file or directory
Makefile:104: pair_lj_class2_coul_long.d: No such file or directory
Makefile:104: pair_lj_class2.d: No such file or directory
Makefile:104: pair_lj_cut_coul_cut.d: No such file or directory
Makefile:104: pair_lj_cut_coul_cut_gpu.d: No such file or directory
Makefile:104: pair_lj_cut_coul_debye.d: No such file or directory
Makefile:104: pair_lj_cut_coul_long.d: No such file or directory
Makefile:104: pair_lj_cut_coul_long_gpu.d: No such file or directory
Makefile:104: pair_lj_cut_coul_long_tip4p.d: No such file or directory
Makefile:104: pair_lj_cut.d: No such file or directory
Makefile:104: pair_lj_cut_gpu.d: No such file or directory
Makefile:104: pair_lj_cut_opt.d: No such file or directory
Makefile:104: pair_lj_expand.d: No such file or directory
Makefile:104: pair_lj_expand_gpu.d: No such file or directory
Makefile:104: pair_lj_gromacs_coul_gromacs.d: No such file or directory
Makefile:104: pair_lj_gromacs.d: No such file or directory
Makefile:104: pair_lj_smooth.d: No such file or directory
Makefile:104: pair_lubricate.d: No such file or directory
Makefile:104: pair_meam.d: No such file or directory
Makefile:104: pair_morse.d: No such file or directory
Makefile:104: pair_morse_gpu.d: No such file or directory
Makefile:104: pair_morse_opt.d: No such file or directory
Makefile:104: pair_peri_lps.d: No such file or directory
Makefile:104: pair_peri_pmb.d: No such file or directory
Makefile:104: pair_reax.d: No such file or directory
Makefile:104: pair_resquared.d: No such file or directory
Makefile:104: pair_soft.d: No such file or directory
Makefile:104: pair_sw.d: No such file or directory
Makefile:104: pair_table.d: No such file or directory
Makefile:104: pair_tersoff.d: No such file or directory
Makefile:104: pair_tersoff_zbl.d: No such file or directory
Makefile:104: pair_yukawa_colloid.d: No such file or directory
Makefile:104: pair_yukawa.d: No such file or directory
Makefile:104: pppm.d: No such file or directory
Makefile:104: pppm_gpu.d: No such file or directory
Makefile:104: pppm_gpu_double.d: No such file or directory
Makefile:104: pppm_gpu_single.d: No such file or directory
Makefile:104: pppm_tip4p.d: No such file or directory
Makefile:104: prd.d: No such file or directory
Makefile:104: random_mars.d: No such file or directory
Makefile:104: random_park.d: No such file or directory
Makefile:104: read_data.d: No such file or directory
Makefile:104: read_restart.d: No such file or directory
Makefile:104: region_block.d: No such file or directory
Makefile:104: region_cone.d: No such file or directory
Makefile:104: region.d: No such file or directory
Makefile:104: region_cylinder.d: No such file or directory
Makefile:104: region_intersect.d: No such file or directory
Makefile:104: region_plane.d: No such file or directory
Makefile:104: region_prism.d: No such file or directory
Makefile:104: region_sphere.d: No such file or directory
Makefile:104: region_union.d: No such file or directory
Makefile:104: remap.d: No such file or directory
Makefile:104: remap_wrap.d: No such file or directory
Makefile:104: replicate.d: No such file or directory
Makefile:104: respa.d: No such file or directory
Makefile:104: run.d: No such file or directory
Makefile:104: set.d: No such file or directory
Makefile:104: special.d: No such file or directory
Makefile:104: tad.d: No such file or directory
Makefile:104: temper.d: No such file or directory
Makefile:104: thermo.d: No such file or directory
Makefile:104: timer.d: No such file or directory
Makefile:104: universe.d: No such file or directory
Makefile:104: update.d: No such file or directory
Makefile:104: variable.d: No such file or directory
mpiicc -O -DLAMMPS_GZIP -I../../lib/reax -I../../lib/poems -I../../lib/meam -DMPICH_SKIP_MPICXX -I/usr/local/fft -DFFT_FFTW -M variable.cpp > variable.d
/bin/sh: mpiicc: not found
make[1]: *** [variable.d] Error 127
make[1]: Leaving directory `/opt/lammps-7May11/src/Obj_linux'
make: *** [linux] Error 2
root@shanisi:/opt/lammps-7May11/src#

2. gmake -f Makefile.list linux

root@shanisi:/opt/lammps-7May11/src# gmake -f Makefile.list linux
No command 'gmake' found, did you mean:
Command 'tmake' from package 'tmake' (universe)
Command 'hmake' from package 'hmake' (universe)
Command 'guake' from package 'guake' (universe)
Command 'imake' from package 'xutils-dev' (main)
Command 'mmake' from package 'mmake' (universe)
Command 'omake' from package 'omake' (universe)
Command 'jmake' from package 'dist' (universe)
Command 'make' from package 'make' (main)
Command 'dmake' from package 'dmake' (main)
Command 'vmake' from package 'hdf4-tools' (universe)
Command 'pmake' from package 'pmake' (main)
Command 'qmake' from package 'qt4-qmake' (main)
Command 'qmake' from package 'qt3-dev-tools' (main)
Command 'cmake' from package 'cmake' (main)
gmake: command not found
root@shanisi:/opt/lammps-7May11/src# ^C
root@shanisi:/opt/lammps-7May11/src#

Are you running "make makelist" as it was posted in the instructions??? Have you tried to install gmake?

Most importantly, have you tried to check the documentation/forums on the LAMMPS site?
http://lammps.sandia.gov/threads/msg18949.html