[EDIT]QtCoder was much faster on the draw![/EDIT]
Usually, you need to make the .bin file executable. If you downloaded it to something in your home directory, you can just issue the command
chmod a+x (flename).bin
. If the file is somewhere else, you usually need to be root to do the chmod. If you have the file directly in /home/you. then these would be the steps:
1) open terminal
2) chmod a+x filename.bin
and that will install it. if it is in a subdirectory of /home/you, then just navigate to it and issue the same commands.