Thanks for such a quick reply.
Well i cannot see the windows share with the "mount" command. Also if there were permissions problem why would the folders without subfolders get copied and folders with subfolders doesn't. I doubt it is the permission problem because i am using SUSE machines where i can do it easily. Maybe i am missing something somewhere. I do not know. Should i mount the full folder editing the samba file in it? I know where and what to edit in case of openSUSE machine but have no idea regarding RHEL.