Well Linux and Windows are different OS's. This would probably mean their file structures are different.
I have a virus on windows. Getting an anti-virus on linux and using it on the NTFS partition, was an idea suggested on this thread:
Windows >> Linux
What's/Which's the best Anti-Virus software, that I can install on Fedora Core 4 (or higher)?
Is there an Anti-Virus on another Linux OS that may solve the problem more easily?