I usually back up my entire /home directory. In fact, now on my laptop, I have a separate home partition to make that easier.
I also backup files where I've had to "tweak" things like modules.conf in mandrake (for the sound on my older laptop) so I don't lose any esoteric settings I may have put in there myself.
I also make a separate partition called /storage where I put in my source code files, mp3s and anything else I don't want a distro install to overwrite. Now upgrading/moving distros is a breeze.
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