LinuxQuestions.org
Download your favorite Linux distribution at LQ ISO.
Go Back   LinuxQuestions.org > Forums > Linux Forums > Linux - General
User Name
Password
Linux - General This Linux forum is for general Linux questions and discussion.
If it is Linux Related and doesn't seem to fit in any other forum then this is the place.

Notices

Reply
 
LinkBack Search this Thread
Old 10-02-2007, 10:18 AM   #1
jalvarez
LQ Newbie
 
Registered: Oct 2007
Posts: 3

Rep: Reputation: 0
ld: errno: tbss mismatches non-TLS reference


Hi everybody,

For some days, I have been trying to compile an application that involves .pc ( Oracle Pro*C ) modules and C ones in a 64-bits Red Hat without success. The problem appears in the link phase:
[root@box1 ivor]# make -f Makefile ivor
gcc -O -m64 -DSUNOS56 -c -o main.o main.c

(I omit the rest of module compilations in shake of brevity, but all of them are successfully performed with exactly the same gcc command )

proc iname=sql

Pro*C/C++: Release 10.2.0.3.0 - Production on Tue Oct 2 10:00:20 2007

Copyright (c) 1982, 2005, Oracle. All rights reserved.

System default option values taken from: /home/oracle/product/10.2.0/precomp/admin/pcscfg.cfg

gcc -O -m64 -DSUNOS56 -c sql.c
gcc -O -m64 -DSUNOS56 -o ivor main.o getopt.o getopt1.o pflow.o process.o filelist.o environ.o cleanup.o error.o argv.o copy.o log.o config.o list.o configy.o configl.o testmode.o filelock.o sql.o -L/home/oracle/product/10.2.0/lib/ -lclntsh `cat /home/oracle/product/10.2.0/lib/ldflags` `cat /home/oracle/product/10.2.0/lib/sysliblist` -ldl -lm
process.o: In function `mkPrimInputFile':
process.c.text+0x213): warning: the use of `mktemp' is dangerous, better use `mkstemp'
/usr/bin/ld: errno: TLS definition in /lib64/libc.so.6 section .tbss mismatches non-TLS reference in cleanup.o
/lib64/libc.so.6: could not read symbols: Bad value
collect2: ld returned 1 exit status
make: *** [ivor] Error 1
rm configy.c


The OS is Red Hat 4.1.1-52 (Linux version 2.6.18-8.1.10.el5xen), the Oracle DB is 10g and the Pro*C/C++ release is 10.2.0.3.0.

Apparently the error messages are due to a conflict between the code generated by the compiler and the library “libc.so.6”. This is the library:

[root@box1 ~]# ls -tl /lib64/libc.so.6
lrwxrwxrwx 1 root root 11 Aug 8 03:55 /lib64/libc.so.6 -> libc-2.5.so


To be honest, I do not know how to check if the library’s version is right. I have tried to find any reference in http://rpm.pbone.net/ without success.

On the other hand, the gcc version is gcc-4.1.1-52.el5.2. I have used yum to check if this is the last version, and apparently it is.

I have also tried to check if my ld configuration was right ( see http://www.linuxquestions.org/questi...d.php?t=453822 ), but the information that I got was not clear to me.

This is the content of my "/etc/ld.so.conf" file :

include ld.so.conf.d/*.conf

If I look at the directory above, I can see this files:

-r--r--r-- 1 root root 324 Aug 31 02:08 /etc/ld.so.conf.d/kernelcap-2.6.18-8.1.10.el5.conf
-r--r--r-- 1 root root 324 Jun 25 22:30 /etc/ld.so.conf.d/kernelcap-2.6.18-8.1.8.el5.conf


And their content are identical:

# This directive teaches ldconfig to search in nosegneg subdirectories
# and cache the DSOs there with extra bit 0 set in their hwcap match
# fields. In Xen guest kernels, the vDSO tells the dynamic linker to
# search in nosegneg subdirectories and to match this extra hwcap bit
# in the ld.so.cache file.
hwcap 0 nosegneg



Finally, I am using the following Makefile:


include $(ORACLE_HOME)/precomp/lib/env_precomp.mk

EXE = ivor

MAINOBJ = main.o getopt.o getopt1.o pflow.o process.o filelist.o \
environ.o cleanup.o error.o argv.o copy.o log.o \
config.o list.o configy.o configl.o testmode.o \
filelock.o sql.o

CC = gcc
CFLAGS = -O -m64 -DSUNOS56


$(EXE): $(MAINOBJ)
$(CC) $(CFLAGS) -o $(EXE) $(MAINOBJ) -L$(LIBHOME) $(PROLDLIBS)

pcp: pcp.o
$(CC) $(CFLAGS) -o pcp pcp.o -L$(LIBHOME) $(PROLDLIBS)

clean:
rm -f $(MAINOBJ) pcp.o $(EXE) pcp sql.c y.tab.c y.tab.h lex.yy.c


.SUFFIXES: .pc


.pc.c:
$(PROC) $(PROCFLAGS) iname=$*

.pc.o:
$(PROC) $(PROCFLAGS) iname=$*
$(CC) $(CFLAGS) -c $*.c



Well, sorry for the very long post. But I have tried to give the most relevant information that I have been able to get. Thank you very much in advance for your suggestions.

Regards,

Jose
 
Old 11-16-2007, 12:29 AM   #2
icedogma
LQ Newbie
 
Registered: Nov 2007
Posts: 3

Rep: Reputation: 0
It looks like you have 3 options:

1) You downgrade your glibc or obtain an older *non-TLS* glibc.

2) [SAFE] Modify your application's sources (in particular, cleanup.c) so that instead of declaring "errno" manually, it instead #includes "errno.h." Do similar things for other files.

3) [NONSAFE] Modify your application's sources (in particular cleanup.c) so that all global variables have __thread keyword specified as part of their declaration.

Pick either one. If you don't have sources, but only the object files, your only option is #1. Besides all this, unfortunately, I have no other way in mind to help you overcome your problem...

-Ilya
 
Old 11-16-2007, 12:00 PM   #3
icedogma
LQ Newbie
 
Registered: Nov 2007
Posts: 3

Rep: Reputation: 0
Quote:
Originally Posted by icedogma View Post

3) [NONSAFE] Modify your application's sources (in particular cleanup.c) so that all global variables have __thread keyword specified as part of their declaration.

Correction: modify all non-application specific *extern* declarations into *extern __thread* -- that should make it safe.
 
Old 11-19-2007, 04:11 AM   #4
jalvarez
LQ Newbie
 
Registered: Oct 2007
Posts: 3

Original Poster
Rep: Reputation: 0
Hi Ilya,

Thank you very much for you suggestions.

I tried the first option and the error vanished. Now I have to deal to another ones, but I think that they are easier.

Regards,

Jose
 
Old 11-21-2007, 12:50 PM   #5
icedogma
LQ Newbie
 
Registered: Nov 2007
Posts: 3

Rep: Reputation: 0
You're welcome, Jose. Good luck with the other errors.
 
Old 01-14-2009, 02:40 PM   #6
cfdehmelt
LQ Newbie
 
Registered: Nov 2008
Posts: 3

Rep: Reputation: 0
Smile Thanks

Hi Ilya,

Ran into same problem - replacing explicit errno declaration with the include resolved the problem - Thanks.

Chris
 
Old 11-06-2009, 06:09 AM   #7
chintubrass
LQ Newbie
 
Registered: Nov 2009
Posts: 1

Rep: Reputation: 0
Thanks!

Thanks icedogma!
The third option worked for me!
 
  


Reply

Tags
libc, mismatch, tls


Thread Tools Search this Thread
Search this Thread:

Advanced Search

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is Off
HTML code is Off
Trackbacks are Off
Pingbacks are On
Refbacks are Off


Similar Threads
Thread Thread Starter Forum Replies Last Post
errno: TLS definition in /lib64/libc.so.6 section .tbss mismatches non-TLS reference johnpaulodonnell Programming 2 07-25-2008 04:37 AM
errno: TLS definition ...mismatches nonTLS def.. maverick_pol Programming 2 05-21-2008 09:45 PM
ld: errno: TLS definition error maverick_pol Slackware 2 07-30-2007 05:15 AM
/usr/bin/ld: errno TLS def.. mismatches non-TLS def.. maverick_pol Fedora 1 07-27-2007 10:50 AM


All times are GMT -5. The time now is 12:48 PM.

Main Menu
My LQ
Write for LQ
LinuxQuestions.org is looking for people interested in writing Editorials, Articles, Reviews, and more. If you'd like to contribute content, let us know.
Main Menu
Syndicate
RSS1  Latest Threads
RSS1  LQ News
Twitter: @linuxquestions
identi.ca: @linuxquestions
Facebook: @linuxquestions
Open Source Consulting | Domain Registration