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3. a boot sector was also asked and in which i place in hda1. after that the upgrading continued wherein only the fist cd of fedora core 5 installation was used.
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This indicates that you installed the grub bootloader for Fedora to the root partition. For the grub bootloader to work, showing you both windows and Fedora, you need to install grub to the MBR (Master Boot Record).
Instead of installing grub to /dev/hda1, it should be /dev/hda (without the partition number). The first part of grub will be written to the MBR, and the remainder in the /boot directory of the installation.