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I won't be too specific because that would point to how to defeat the procedures. But, essentially, it is a combination of honeypots and pattern matching. My site has locations on it that a human will never, ever find but a site scraper will find. I link these locations using a one pixel gif which is physically hidden behind another gif on the page. Humans will never reach it, but a site scraper will find the link, follow it, and get immediately blacklisted. I keep search engines that I want visiting the site from falling into the honeypots with .htaccess entries.
Pattern matching looks for things that are commonly done by scrapers; too many pages in too short a time; downloading pages while not downloading images; downloading images while not downloading pages - things like that.