After you ssh into your server, start a screen session (see 'man screen' for details).
screen is a great tool. When you enter a screen session, you can start a program running. When you escape from a screen session, the program stays running. You can resume and escape screen sessions at will.
To start screen at the console prompt, type screen
To escape a screen session, type Ctrl-a-d (first ctrl key and hold while pressing a then d). You can now exit PuTTY.
To resume a screen session, ssh into the server again, then type screen -r.
When you are finished with your screen session, type exit.
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