Wow, why all the duplicates?
And why all the deb-src lines?
Do you actually build anything from source?
I don't use ubuntu so probably can't give definitive advice but...
initramfs-tools : Depends: initramfs-tools-bin (< 0.99ubuntu13.1~) but 0.99ubuntu13.1 is to be installed
Your version of initramfs-tools requires an earlier version of initramfs-tool-bin than you currently have installed.
Maybe try upgrading initramfs-tools to the one in the precise repo (which presumably should match your version of initramfs-tools-bin).
I would say either you have only partially upgraded at some stage, or you have installed that initramfs-tools package (maybe as a dependency of something else) from another source (I have heard that multiverse packages can be a bit variable in quality, and are not supported by Canonical).
edit: I don't think universe is either, but someone will correct me if I'm wrong.
Also maybe try using aptitude. It can be a bit smarter at resolving curly dependency chains.