Okay - You only have one harddrive with a C: and a D: drive in windows? If the answer to that is yes then you should install Fedora to /dev/hda2. The reasoning behind this is this:
/dev/hda is the first IDE drive in the machine. If there were a second it would show up as /dev/hdb, a third /dev/hdc and so on (although the third is usually a CD-ROM or DVD-ROM device)
Within any of these drives are partitions, (Windows gives partitions letters, such as C: and D

which, in linux, are represented by numbers.
/dev/hda1 is the first primary partition on the first disk.
/dev/hda4 is the fourth primary partition on the first disk.
/dev/hdb6 is the second extended partition on the second disk.
etc.
(If you don't understand this, please let me know - I will be more than happy to expound further.)
Also, have you looked into any of the Linux CAD's? From what I hear they do a rather good job.