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1) Will 'etch' not run the newer kernel?
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There should be no problems running the 2.6.12 kernel in etch because it's available in the official etch repository. You can "apt-get install" the kernel-image, there's really no reason at all to download & install it manually unless you, from some strange reason, prefer to do it that way.
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2) By performing dist-upgrade under the 2.6.8 kernel, have i now mucked things up by 'reverting' to 2.6.12?
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No you haven't.

Etch is a development branch and it's quite normal to upgrade packages to newer versions in etch. In Debian stable the package versions stay unchanged. (That's one of the reasons why it's called stable.)
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3) Should i do another apt-get dist-upgrade using the 2.6.12?
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Yes you should. Etch is a development branch and sometimes the dependencies for packages change from one version to another. "apt-get upgrade" doesn't handle such changes but "apt-get dist-upgrade" does. So it's actually preferable to use "apt-get dist-upgrade" in etch. If you use only "apt-get upgrade", apt-get will complain when it finds packages with changed dependencies and it will refuse to upgrade them until you run "apt-get dist-upgrade".